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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs5995107 chr22:35892800 A/G TUBGCP6 chr22:50656118-50683421:- -0.37 -6.3 6.79E-10 Box Plot
THCA rs59954492 chr3:125800268 C/A ROPN1 chr3:123687368-123711025:- -0.33 -6.08 2.49E-9 Box Plot
THCA rs59955136 chr1:26544129 G/A GLRX chr5:95087023-95158709:- 0.31 5.94 5.37E-9 Box Plot
THCA rs59964384 chr5:49494027 CA/C LOC647121 chr1:121260910-121313686:+ -0.36 -7.78 4.66E-14 Box Plot
THCA rs59965165 chr2:132241452 T/C TUBA3E chr2:130949316-130956034:- 0.54 6.23 1.0E-9 Box Plot
THCA rs59968174 chr5:46028041 C/T LOC647121 chr1:121260910-121313686:+ 0.31 6.04 3.06E-9 Box Plot
THCA rs59970966 chr13:82138220 CAG/C LHX1 chr17:35294084-35301912:+ 0.32 5.98 4.27E-9 Box Plot
THCA rs5998351 chr22:32654975 C/T NOL12 chr22:38077680-38089485:+ -0.37 -6.24 9.83E-10 Box Plot
THCA rs5998366 chr22:32665525 C/T ACO2 chr22:41865129-41924993:+ 0.66 8.47 3.08E-16 Box Plot
THCA rs5998366 chr22:32665525 C/T ADSL chr22:40742504-40786467:+ 0.72 8.41 4.74E-16 Box Plot
THCA rs5998366 chr22:32665525 C/T ALG12 chr22:50293877-50312106:- 0.62 7.85 2.69E-14 Box Plot
THCA rs5998366 chr22:32665525 C/T ANKRD54 chr22:38226862-38245334:- 0.67 8.33 8.32E-16 Box Plot
THCA rs5998366 chr22:32665525 C/T AP1B1 chr22:29723669-29819168:- 0.91 9.81 8.24E-21 Box Plot
THCA rs5998366 chr22:32665525 C/T APOBEC3F chr22:39436609-39449915:+ 0.6 7.36 8.15E-13 Box Plot
THCA rs5998366 chr22:32665525 C/T ARFGAP3 chr22:43192508-43254112:- 0.69 7.64 1.21E-13 Box Plot